Package: NamibianHake 0.0.0.9000
NamibianHake: Namibian Hake Stock Assessment Model
Runs, validates, summarizes, and reports results from the age-structured ADMB assessment model for Namibian hake.
Authors:
NamibianHake_0.0.0.9000.tar.gz
NamibianHake_0.0.0.9000.zip(r-4.7-any)NamibianHake_0.0.0.9000.zip(r-4.6-any)NamibianHake_0.0.0.9000.zip(r-4.5-any)
NamibianHake_0.0.0.9000.tgz(r-4.6-any)NamibianHake_0.0.0.9000.tgz(r-4.5-any)
NamibianHake_0.0.0.9000.tar.gz(r-4.7-any)NamibianHake_0.0.0.9000.tar.gz(r-4.6-any)
NamibianHake_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
NamibianHake/json (API)
| # Install 'NamibianHake' in R: |
| install.packages('NamibianHake', repos = c('https://jimianelli.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jimianelli/namibianhake/issues
Pkgdown/docs site:https://jimianelli.github.io
Last updated from:99ff509058. Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 145 | ||
| source / vignettes | OK | 215 | ||
| linux-release-x86_64 | WARNING | 192 | ||
| macos-release-arm64 | WARNING | 132 | ||
| macos-oldrel-arm64 | WARNING | 119 | ||
| windows-devel-x86_64 | WARNING | 115 | ||
| windows-release-x86_64 | WARNING | 83 | ||
| windows-oldrel-x86_64 | WARNING | 110 | ||
| wasm-release | OK | 159 |
Exports:get_relative_biomassget_resultsplot_selPlotAgeFitread_admbread_ctlread_fitread_psvread_reprun_nh
Dependencies:bitbit64clicliprcpp11crayondplyrgenericsglueherehmslifecyclemagrittrpillarpkgconfigprettyunitsprogressR6readrrlangrprojroottibbletidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Plot Selectivity | plot_sel |
| Plot Age Fit | PlotAgeFit |
| Read ADMB output files | read_admb |
| Read ADMB .ctl file | read_ctl |
| Read ADMB .par, .std, and .cor file and return an R object of type 'list' of estimates and correlations | read_fit |
| Read ADMB .psv file | read_psv |
| Read output file from the random effects (RE) model into a data.frame | read_re_output |
| Read ADMB .rep file | read_rep |
| Test the RE on a single species. This compares a current ADMB univariate run to a previous run. It tests _continuity_ not correctness | test_re_species |
| Write an input file for the RE model | write_re_input |
