{ "_id": "6a1f1eb8b401979e7341ff36", "Package": "sa4all", "Title": "Write Stock Assessments for general purposes", "Version": "0.0.0.0002", "Authors@R": "c(\nperson(given = c(\"Kelli\", \"F.\"),\nfamily = \"Johnson\",\nrole = c(\"aut\", \"cre\"),\nemail = \"kelli.johnson@noaa.gov\",\ncomment = c(ORCID = \"0000-0002-5149-451X\")),\nperson(given = c(\"Chantel\", \"R.\"),\nfamily = \"Wetzel\",\nrole = \"aut\",\nemail = \"chantel.wetzel@noaa.gov\",\ncomment = c(ORCID = \"0000-0002-7573-8240\") ),\nperson(given = c(\"James\", \"N.\"),\nfamily = \"Ianelli\",\nrole = \"aut\",\nemail = \"jim.ianelli@noaa.gov\",\ncomment = \"Hi!\" ) )", "Maintainer": "Kelli F. Johnson ", "Description": "Create files and the structure necessary to facilitate\nrapid and reproducible creation of stock assessment documents\nfrom model output generated by Stock Synthesis (SS). The\nincluded components and structure are specific to requests from\nthe Pacific Fisheries Management Council for US West Coast\ngroundfish.", "BugReports": "https://github.com/afsc-assess/sa4all/issues", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.1.1", "Remotes": [ "github::r4ss/r4ss" ], "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev git make libharfbuzz-dev libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev", "Repository": "https://jimianelli.r-universe.dev", "Date/Publication": "2021-05-12 05:41:00 UTC", "RemoteUrl": "https://github.com/afsc-assessments/sa4all", "RemoteRef": "HEAD", "RemoteSha": "2bb3b6b69759fb1c4313cdd1d945b7909ec681b7", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-16 08:21:14 UTC", "User": "root" }, "Author": "Kelli F. Johnson [aut, cre] (ORCID:\n),\nChantel R. Wetzel [aut] (ORCID:\n),\nJames N. Ianelli [aut] (Hi!)", "MD5sum": "bdf7b9f5d56230f8352d66ecfaa70a1a", "_user": "jimianelli", "_type": "src", "_file": "sa4all_0.0.0.0002.tar.gz", "_fileid": "0df5d43807c563f5e4ffe29c37369288811dc2527daeadf07effeb44df94562f", "_filesize": 323050, "_sha256": "0df5d43807c563f5e4ffe29c37369288811dc2527daeadf07effeb44df94562f", "_created": "2026-05-16T08:21:14.000Z", "_published": "2026-06-02T18:19:36.399Z", "_distro": "noble", "_jobs": [ { "job": 79141498283, "time": 154, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7031925170" }, { "job": 79141498240, "time": 152, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7031924841" }, { "job": 79141498242, "time": 103, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7031920862" }, { "job": 79141498394, "time": 126, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7031923021" }, { "job": 79141497323, "time": 205, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7031910131" }, { "job": 79141497289, "time": 163, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7366259834" }, { "job": 79141498181, "time": 91, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7031919023" }, { "job": 79141498799, "time": 108, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7031920547" }, { "job": 79141498369, "time": 94, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7031919330" } ], "_buildurl": "https://github.com/r-universe/jimianelli/actions/runs/25957124177", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/afsc-assessments/sa4all", "_commit": { "id": "2bb3b6b69759fb1c4313cdd1d945b7909ec681b7", "author": "jimianelli ", "committer": "jimianelli ", "message": "renamed file\n", "time": 1620798060 }, "_maintainer": { "name": "Kelli F. Johnson", "email": "kelli.johnson@noaa.gov", "login": "kellijohnson-noaa", "orcid": "0000-0002-5149-451X", "uuid": 4108564 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "bookdown", "role": "Imports" }, { "package": "knitr", "role": "Imports" }, { "package": "kableExtra", "role": "Imports" }, { "package": "pkgload", "role": "Imports" }, { "package": "r4ss", "role": "Imports" }, { "package": "rmarkdown", "role": "Imports" }, { "package": "rticles", "role": "Imports" }, { "package": "tinytex", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "xfun", "role": "Imports" }, { "package": "yaml", "role": "Imports" }, { "package": "devtools", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "usethis", "role": "Suggests" } ], "_owner": "afsc-assessments", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 3, "_contributors": [ { "user": "chantelwetzel-noaa", "count": 43, "uuid": 6172110 }, { "user": "kellijohnson-noaa", "count": 24, "uuid": 4108564 }, { "user": "jimianelli", "count": 10, "uuid": 2715618 } ], "_userbio": { "uuid": 2715618, "type": "user", "name": "Jim Ianelli" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sa4all" }, "_devurl": "https://github.com/afsc-assess/sa4all", "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/sa4all.html", "manual.pdf" ], "_cranurl": false, "_exports": [ "add_figure", "check_yaml", "create_tempdir_for_latex", "draft", "es_table_tex", "get_affiliation", "get_avail", "read_child", "read_model", "session_test", "table_format", "techreport_pdf", "write_authors" ], "_datasets": [ { "name": "authors", "title": "A data frame of authors and their affiliations", "object": "authors", "class": [ "data.frame" ], "fields": [ "author", "affiliation" ], "rows": 29, "table": true, "tojson": true } ], "_help": [ { "page": "add_figure", "title": "Read, render, and use a figure from a specific directory.", "topics": [ "add_figure" ] }, { "page": "authors", "title": "A data frame of authors and their affiliations", "topics": [ "authors" ] }, { "page": "check_yaml", "title": "Check to make sure index.Rmd contains all current YAML options", "topics": [ "check_yaml" ] }, { "page": "create_tempdir_for_latex", "title": "Creates a temporary directory for compiling the latex file with latex commands for a csasdown type", "topics": [ "create_tempdir_for_latex" ] }, { "page": "doit", "title": "Internal Code to Build, Load, and Render the sa Template", "topics": [ "doit" ] }, { "page": "draft", "title": "Create a 'sa4all' Draft Containing Directories and Files", "topics": [ "draft" ] }, { "page": "es_table_tex", "title": "Create tex file from executive summary tables", "topics": [ "es_table_tex" ] }, { "page": "get_affiliation", "title": "Get Affiliations for Authors", "topics": [ "get_affiliation" ] }, { "page": "get_avail", "title": "Get Available 'Rmd' Options For A Given Section", "topics": [ "get_avail" ] }, { "page": "get_plotinfo", "title": "The following script will look for the CSV file plotInfoTable created by r4ss in order to automate some of the plots. The plotInfoTable file is added to the folder each time SS_plots is run (including when you update any of the plots) The most recent version of plotInfoTable with the complete list of plots will be used.", "topics": [ "get_plotinfo" ] }, { "page": "read_child", "title": "Read, render, and use a child document", "topics": [ "read_child" ] }, { "page": "read_model", "title": "Create a 'sa4all' an RData object", "topics": [ "read_model" ] }, { "page": "sa4all", "title": "sa4all: Generate stock assessment pdfs from Stock Synthesis (SS)", "topics": [ "sa4all" ] }, { "page": "session_test", "title": "Test your installation of sa4all", "topics": [ "session_test" ] }, { "page": "table_format", "title": "Custom table for sa4all", "topics": [ "table_format" ] }, { "page": "techreport_pdf", "title": "Technical report output formatting", "topics": [ "techreport_pdf" ] }, { "page": "write_authors", "title": "Compile Authors Names in YAML Form", "topics": [ "write_authors" ] }, { "page": "write_summary", "title": "Write Summary Files", "topics": [ "write_summary" ] }, { "page": "write_title", "title": "Compile Title in YAML format", "topics": [ "write_title" ] } ], "_readme": "https://github.com/afsc-assessments/sa4all/raw/HEAD/README.md", "_rundeps": [ "base64enc", "bookdown", "bslib", "cachem", "callr", "cli", "coda", "corpcor", "cpp11", "desc", "digest", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "forcats", "fs", "generics", "ggplot2", "glue", "gtable", "highr", "htmltools", "isoband", "jquerylib", "jsonlite", "kableExtra", "knitr", "labeling", "lattice", "lifecycle", "magrittr", "memoise", "mime", "pillar", "pkgbuild", "pkgconfig", "pkgload", "processx", "ps", "r4ss", "R6", "rappdirs", "RColorBrewer", "rlang", "rmarkdown", "rprojroot", "rstudioapi", "rticles", "S7", "sass", "scales", "stringi", "stringr", "svglite", "systemfonts", "textshaping", "tibble", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "withr", "xfun", "xml2", "yaml" ], "_score": 2.4771212547196626, "_indexed": false, "_nocasepkg": "sa4all", "_universes": [ "jimianelli" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.0.0002", "date": "2026-05-16T08:23:45.000Z", "distro": "noble", "commit": "2bb3b6b69759fb1c4313cdd1d945b7909ec681b7", "fileid": "da9e0874710374055a0587290b6058cb42acabc7521fe81fb77a295b5d217649", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jimianelli/actions/runs/25957124177" }, { "r": "4.6.0", "os": "linux", "version": "0.0.0.0002", "date": "2026-05-16T08:23:43.000Z", "distro": "noble", "commit": "2bb3b6b69759fb1c4313cdd1d945b7909ec681b7", "fileid": "32549ea25b92377f8950945eeed14c97db002cd1c0510261baf446353e82a4c8", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jimianelli/actions/runs/25957124177" }, { "r": "4.5.3", "os": "mac", "version": "0.0.0.0002", "date": "2026-05-16T08:23:01.000Z", "commit": "2bb3b6b69759fb1c4313cdd1d945b7909ec681b7", "fileid": "0d81562b339ee49243b952a3c2cfd86773266dfeb051b2826960c96c230f5d7f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jimianelli/actions/runs/25957124177" }, { "r": "4.6.0", "os": "mac", "version": "0.0.0.0002", "date": "2026-05-16T08:23:20.000Z", "commit": "2bb3b6b69759fb1c4313cdd1d945b7909ec681b7", "fileid": "93325acf58dd9beda13da52a80a439f0f0de5e55c5347a3980c840ee2ce31247", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jimianelli/actions/runs/25957124177" }, { "r": "4.7.0", "os": "win", "version": "0.0.0.0002", "date": "2026-05-16T08:22:32.000Z", "commit": "2bb3b6b69759fb1c4313cdd1d945b7909ec681b7", "fileid": "ed0d2b4a497775e734ca13a117810cdcaa445f924565a1a5d678ae93acfade34", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jimianelli/actions/runs/25957124177" }, { "r": "4.5.3", "os": "win", "version": "0.0.0.0002", "date": "2026-05-16T08:22:44.000Z", "commit": "2bb3b6b69759fb1c4313cdd1d945b7909ec681b7", "fileid": "ed2b29a6d568422a8a035c687201036969443951f20b15fbf48506f7aead637f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jimianelli/actions/runs/25957124177" }, { "r": "4.6.0", "os": "win", "version": "0.0.0.0002", "date": "2026-05-16T08:22:36.000Z", "commit": "2bb3b6b69759fb1c4313cdd1d945b7909ec681b7", "fileid": "f665f0a32796d58fcb309f530350440e96173819a3067da2ecd7c4320b7a5c76", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jimianelli/actions/runs/25957124177" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.0.0002", "date": "2026-06-02T18:19:21.000Z", "commit": "2bb3b6b69759fb1c4313cdd1d945b7909ec681b7", "fileid": "48358e3ea9c1413e1b688376027d7446bb545b9f582a11f463fc7525a0079b65", "status": "success", "buildurl": "https://github.com/r-universe/jimianelli/actions/runs/25957124177" } ] }