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Package: inseasonDashboard 0.1.0

Steve Barbeaux

inseasonDashboard: In-Season Fishery Monitoring Tools

Tools for accessing AFSC and AKFIN databases and producing standardized in-season fishery summaries and diagnostics.

Authors:Steve Barbeaux [aut, cre]

inseasonDashboard_0.1.0.tar.gz
inseasonDashboard_0.1.0.zip(r-4.7)inseasonDashboard_0.1.0.zip(r-4.6)inseasonDashboard_0.1.0.zip(r-4.5)
inseasonDashboard_0.1.0.tgz(r-4.6-any)inseasonDashboard_0.1.0.tgz(r-4.5-any)
inseasonDashboard_0.1.0.tar.gz(r-4.7-any)inseasonDashboard_0.1.0.tar.gz(r-4.6-any)
inseasonDashboard_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
inseasonDashboard/json (API)

# Install 'inseasonDashboard' in R:

install.packages('inseasonDashboard', repos = c('https://jimianelli.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/afsc-assessments/inseasondashr/issues

On CRAN:

2.40 score 16 exports 76 dependencies

Last updated from:e98d4c32da. Checks:7 ERROR, 2 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	ERROR	155
source / vignettes	OK	255
linux-release-x86_64	ERROR	176
macos-release-arm64	ERROR	128
macos-oldrel-arm64	ERROR	142
windows-devel	ERROR	156
windows-release	ERROR	98
windows-oldrel	ERROR	95
wasm-release	OK	141

Exports:db_connect empty_message_plot get_catch_data_date get_codes get_council_catch_data get_length_freq_data_date get_observer_cpue_data launch_inseason plot_catch_depth_noaa_np_date plot_catch_depth_noaa_np_grid_date plot_catch_locations_noaa_np_date plot_catch_locations_noaa_np_grid_date plot_cumulative_catch_by_week plot_length_frequency_noaa plot_observer_cpue run_inseason_dashboard

Dependencies:askpass base64enc bit bit64 blob bslib cachem class classInt cli commonmark cpp11 curl data.table DBI digest dplyr e1071 farver fastmap filelock fontawesome fs generics ggplot2 glue gtable hms htmltools httpuv httr isoband jquerylib jsonlite KernSmooth keyring labeling later lifecycle magrittr MASS memoise mime odbc openssl otel pillar pkgconfig promises proxy R6 rappdirs RColorBrewer Rcpp rlang rnaturalearth rnaturalearthdata s2 S7 sass scales sf shiny sourcetools sys terra tibble tidyselect units utf8 vctrs viridisLite withr wk xtable yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
function to format numbers to text with 1,000s comma	comma
Connect to AFSC and AKFIN databases	db_connect
Create an empty plot with a centered message	empty_message_plot
Pull Observer + EM catch data for a species and optional date range	get_catch_data_date
Retrieve code table rows for one or more species	get_codes
Retrieve catch data by species and minimum year	get_council_catch_data
Pull observer length-frequency data (AFSC) by species and date range	get_length_freq_data_date
Pull observer-based CPUE data and construct monthly CPUE indices	get_observer_cpue_data
Launch the inseason dashboard	launch_inseason
Plot catch depth by latitude or longitude (NOAA North Pacific style)	plot_catch_depth_noaa_np_date
Plot gridded catch by depth vs latitude/longitude (date-range filter; dateline-safe)	plot_catch_depth_noaa_np_grid_date
Plot catch locations on a NOAA-style North Pacific map (date-range filter)	plot_catch_locations_noaa_np_date
Plot gridded catch locations on a NOAA-style North Pacific map (date-range filter)	plot_catch_locations_noaa_np_grid_date
Plot cumulative catch by week with one line per year	plot_cumulative_catch_by_week
Plot length-frequency composition (with region & gear options)	plot_length_frequency_noaa
Plot Observer CPUE Time Series (Proportional Catch Method)	plot_observer_cpue
Run the inseason Shiny dashboard	run_inseason_dashboard