afsc-assessments. To fix this you can add URL: https://jimianelli.r-universe.dev/WtAgeRe to the package DESCRIPTION file. See also theR-universe documentation.Package: WtAgeRe 0.1.0
Jim Ianelli
WtAgeRe: Fish Body Mass at Age Estimation
A random effects model for estimating variance in weight-at-age, with utilities to read ADMB outputs and plot weight-at-age anomalies.
Authors:
WtAgeRe_0.1.0.tar.gz
WtAgeRe_0.1.0.tgz(r-4.6-x86_64)WtAgeRe_0.1.0.tgz(r-4.6-arm64)WtAgeRe_0.1.0.tgz(r-4.5-x86_64)WtAgeRe_0.1.0.tgz(r-4.5-arm64)
WtAgeRe_0.1.0.tar.gz(r-4.7-arm64)WtAgeRe_0.1.0.tar.gz(r-4.7-x86_64)WtAgeRe_0.1.0.tar.gz(r-4.6-arm64)WtAgeRe_0.1.0.tar.gz(r-4.6-x86_64)
WtAgeRe_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
WtAgeRe/json (API)
| # Install 'WtAgeRe' in R: |
| install.packages('WtAgeRe', repos = c('https://jimianelli.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/afsc-assessments/wtagere/issues
Pkgdown/docs site:https://afsc-assessments.github.io
Last updated from:dbc2f7e98b. Checks:8 WARNING, 1 ERROR, 3 FAIL, 1 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | WARNING | 145 | ||
| linux-devel-x86_64 | WARNING | 127 | ||
| source / vignettes | ERROR | 178 | ||
| linux-release-arm64 | WARNING | 143 | ||
| linux-release-x86_64 | WARNING | 122 | ||
| macos-release-arm64 | WARNING | 104 | ||
| macos-release-x86_64 | WARNING | 754 | ||
| macos-oldrel-arm64 | WARNING | 82 | ||
| macos-oldrel-x86_64 | WARNING | 186 | ||
| windows-devel | FAIL | 64 | ||
| windows-release | FAIL | 98 | ||
| windows-oldrel | FAIL | 145 | ||
| wasm-release | OK | 104 |
Exports:colrfit_wt_rtmbfn_get_predfn_plot_anomsmake_age_error_matrixmake_wt_rtmb_dataread_admbread_ctlread_datread_fitread_psvread_repreplace_zeros_with_meanreplace_zeros_with_twowrite_datwrite_wt_rtmb_true_valueswt_rtmb_reportwt_rtmb_true_values
Dependencies:clicpp11dplyrfarvergenericsggplot2gluegtableisobandlabelinglifecyclemagrittrpillarpkgconfigpurrrR6RColorBrewerrlangS7scalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Transparent colors | colr |
| Get predicted weight-at-age | fn_get_pred |
| Plot weight-at-age anomalies | fn_plot_anoms |
| Read ADMB output files | read_admb |
| Read ADMB .ctl file | read_ctl |
| Read ADMB data files | read_dat |
| Read ADMB .par, .std, and .cor file and return an R object of type 'list' of estimates and correlations | read_fit |
| Read ADMB .psv file | read_psv |
| Read ADMB .rep file | read_rep |
| Replace outliers with mean for mean weight-at-age | replace_zeros_with_mean |
| Replace zeros with near-two for SD | replace_zeros_with_two |
| Write ADMB data file | write_dat |
