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Package: sa4all 0.0.0.0002

Kelli F. Johnson

sa4all: Write Stock Assessments for general purposes

Create files and the structure necessary to facilitate rapid and reproducible creation of stock assessment documents from model output generated by Stock Synthesis (SS). The included components and structure are specific to requests from the Pacific Fisheries Management Council for US West Coast groundfish.

Authors:Kelli F. Johnson [aut, cre], Chantel R. Wetzel [aut], James N. Ianelli [aut]

sa4all_0.0.0.0002.tar.gz
sa4all_0.0.0.0002.zip(r-4.7)sa4all_0.0.0.0002.zip(r-4.6)sa4all_0.0.0.0002.zip(r-4.5)
sa4all_0.0.0.0002.tgz(r-4.6-any)sa4all_0.0.0.0002.tgz(r-4.5-any)
sa4all_0.0.0.0002.tar.gz(r-4.7-any)sa4all_0.0.0.0002.tar.gz(r-4.6-any)
sa4all_0.0.0.0002.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
sa4all/json (API)

# Install 'sa4all' in R:

install.packages('sa4all', repos = c('https://jimianelli.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/afsc-assess/sa4all/issues

Datasets:

authors - A data frame of authors and their affiliations

On CRAN:

2.48 score 3 stars 2 scripts 13 exports 68 dependencies

Last updated from:2bb3b6b697. Checks:7 WARNING, 2 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	WARNING	154
source / vignettes	OK	205
linux-release-x86_64	WARNING	152
macos-release-arm64	WARNING	126
macos-oldrel-arm64	WARNING	103
windows-devel	WARNING	91
windows-release	WARNING	94
windows-oldrel	WARNING	108
wasm-release	OK	163

Exports:add_figure check_yaml create_tempdir_for_latex draft es_table_tex get_affiliation get_avail read_child read_model session_test table_format techreport_pdf write_authors

Dependencies:base64enc bookdown bslib cachem callr cli coda corpcor cpp11 desc digest dplyr evaluate farver fastmap fontawesome forcats fs generics ggplot2 glue gtable highr htmltools isoband jquerylib jsonlite kableExtra knitr labeling lattice lifecycle magrittr memoise mime pillar pkgbuild pkgconfig pkgload processx ps r4ss R6 rappdirs RColorBrewer rlang rmarkdown rprojroot rstudioapi rticles S7 sass scales stringi stringr svglite systemfonts textshaping tibble tidyselect tinytex utf8 vctrs viridisLite withr xfun xml2 yaml

Help page	Topics
Read, render, and use a figure from a specific directory.	add_figure
A data frame of authors and their affiliations	authors
Check to make sure index.Rmd contains all current YAML options	check_yaml
Creates a temporary directory for compiling the latex file with latex commands for a csasdown type	create_tempdir_for_latex
Internal Code to Build, Load, and Render the sa Template	doit
Create a 'sa4all' Draft Containing Directories and Files	draft
Create tex file from executive summary tables	es_table_tex
Get Affiliations for Authors	get_affiliation
Get Available 'Rmd' Options For A Given Section	get_avail
The following script will look for the CSV file plotInfoTable created by r4ss in order to automate some of the plots. The plotInfoTable file is added to the folder each time SS_plots is run (including when you update any of the plots) The most recent version of plotInfoTable with the complete list of plots will be used.	get_plotinfo
Read, render, and use a child document	read_child
Create a 'sa4all' an RData object	read_model
sa4all: Generate stock assessment pdfs from Stock Synthesis (SS)	sa4all
Test your installation of sa4all	session_test
Custom table for sa4all	table_format
Technical report output formatting	techreport_pdf
Compile Authors Names in YAML Form	write_authors
Write Summary Files	write_summary
Compile Title in YAML format	write_title

Package: sa4all 0.0.0.0002

sa4all: Write Stock Assessments for general purposes

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Usage by other packages (reverse dependencies)